View BioCreative III PPI ACT dataset (public)

2012-12-31 12:22 by krallinger | Version 1 | Rating Empty StarEmpty StarEmpty StarEmpty StarEmpty StarEmpty Star
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Summary

Dataset used for the article classification task of BioCreative III (see http://www.biocreative.org/tasks/biocreative-iii/ppi/)

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article Biocreative categorization Classification ranking text
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Description

Dataset used for the article classification task of BioCreative III (see http://www.biocreative.org/tasks/biocreative-iii/ppi/).

Detecting articles describing complex biological events like Protein-protein interaction was addressed in the Article Classification Task (ACT), where participants were asked to implement tools for detecting PPI-describing abstracts. Therefore the BioCreative III-ACT corpus was provided, which includes a training, development and test set of over 12,000 PPI relevant and non-relevant PubMed abstracts labeled manually by domain experts and recording also the human classification times.

URLs
http://www.biocreative.org/tasks/biocreative-iii/ppi
Publications
    Data Source
    PubMed records (abstracts)
    Measurement Details

    Evaluation will be based on comparison between automatically generated results and manual examination of a set of PubMed records. Evaluation was done using the evaluation library for the ACT task: http://www.biocreative.org/resources/biocreative-ii5/evaluation-library/

    Usage Scenario

    Literature retrieval by biomedical researches, and database curators.

    revision 1
    by krallinger on 2012-12-31 12:22

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    Acknowledgements

    This project is supported by PASCAL (Pattern Analysis, Statistical Modelling and Computational Learning)
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