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Summary

Binding affinity of MHC class I molecules

DOI (more info at datacite)
10.5881/MHC-AFFINITY
License
CC0
Dependencies
Tags
bioinformatics mhc
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bz2
Name
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Description

MHC class 1 molecule binding affinity.

Obtained via Christian Widmer.

C. Widmer, N. Toussaint, Y. Altun, and G. Ratsch. Inferring latent task structure for multitask learning ยจ by multiple kernel learning. BMC Bioinformatics, 11(Suppl 8:S5), 2010.

Superset of the data mhc-nips11

URLs
http://tools.iedb.org/main/html/datasets.html
Publications
    Data Source
    B. Peters et. al. A community resource benchmarking predictions of peptide binding to mhc-i molecules. PLoS Computational Biology, 2(6):e65, 2006.
    Measurement Details
    • Features are the 45 PCA values of encoded peptides (divided by the vector norm). PCA done in Widmer et. al.
    • Labels are -log10(ic50s)+log10(500)
    • First column contains the label, second column the context, the rest the features
    Usage Scenario
    revision 1
    by cong on 2014-12-06 07:33

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    Acknowledgements

    This project is supported by PASCAL (Pattern Analysis, Statistical Modelling and Computational Learning)
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