View Protein Fold Prediction ucsd-mkl (public)

2011-02-28 14:57 by hzahn | Version 1 | Rating Empty StarEmpty StarEmpty StarEmpty StarEmpty StarEmpty Star
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Summary

multy kernel learning dataset on protein fold prediction

License
unknown (from UCI repository)
Dependencies
Tags
multi-class multi-kernel protein-fold-prediction
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Original Data Format
unknown
Name
Version mldata
Comment
Names
Data (first 10 data points)
    (Zipped) TAR archive ./._DingShenDam, DingShenDam, DingShenDam/._Composition_Test.csv, DingShenDam/Composition_Test.csv, DingShenDam/._Composition_Train.csv, DingShenDam/Composition_Train.csv, DingShenDam/._Hydrophobicity_Test.csv, DingShenDam/Hydrophobicity_Test.csv, DingShenDam/._Hydrophobicity_Train.csv, DingShenDam/Hydrophobicity_Train.csv, DingShenDam/._L14_Test.csv, DingShenDam/L14_Test.csv, DingShenDam/._L14_Train.csv, DingShenDam/L14_Train.csv, DingShenDam/._L1_Test.csv, DingShenDam/L1_Test.csv, DingShenDam/._L1_Train.csv, DingShenDam/L1_Train.csv, DingShenDam/._L30_Test.csv, DingShenDam/L30_Test.csv, DingShenDam/._L30_Train.csv, DingShenDam/L30_Train.csv, DingShenDam/._L4_Test.csv, DingShenDam/L4_Test.csv, DingShenDam/._L4_Train.csv, DingShenDam/L4_Train.csv, DingShenDam/._Polarity_Test.csv, DingShenDam/Polarity_Test.csv, DingShenDam/._Polarity_Train.csv, DingShenDam/Polarity_Train.csv, DingShenDam/._Polarizability_Test.csv, DingShenDam/Polarizability_Test.csv, DingShenDam/._Polarizability_Train.csv, DingShenDam/Polarizability_Train.csv, DingShenDam/._Secondary_Test.csv, DingShenDam/Secondary_Test.csv, DingShenDam/._Secondary_Train.csv, DingShenDam/Secondary_Train.csv, DingShenDam/._SWblosum62_Test.csv, DingShenDam/SWblosum62_Test.csv, DingShenDam/._SWblosum62_Train.csv, DingShenDam/SWblosum62_Train.csv, DingShenDam/._SWpam50_Test.csv, DingShenDam/SWpam50_Test.csv, DingShenDam/._SWpam50_Train.csv, DingShenDam/SWpam50_Train.csv, DingShenDam/._t_Test.csv, DingShenDam/t_Test.csv, DingShenDam/._t_Train.csv, DingShenDam/t_Train.csv, DingShenDam/._Volume_Test.csv, DingShenDam/Volume_Test.csv, DingShenDam/._Volume_Train.csv, DingShenDam/Volume_Train.csv
Description

This dataset is on protein fold prediction (multiclass classification with 27 classes) based on a subset of the PDB-40D SCOP collection. It is an extension of the original dataset by Ding that also includes the pseudo-amino acid compositions proposed by Shen and Chou and the Smith-Waterman String kernels employed in Damoulas and Girolami.

URLs
http://mkl.ucsd.edu/dataset/protein-fold-prediction
Publications
    Data Source
    The file contains *_Train.csv and *_Test.csv files describing the 12 different feature spaces that should be used to construct individual base kernels for MKL. The data is split to independent train and test sets with 311 samples for training and 383 samples for testing. It also includes the labels in t_Test.csv and t_Train.csv files.
    Measurement Details
    Usage Scenario
    revision 1
    by hzahn on 2011-02-28 14:57

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    Acknowledgements

    This project is supported by PASCAL (Pattern Analysis, Statistical Modelling and Computational Learning)
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